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History

dependabot[bot] 4cdd21b171 Bump numpy from 1.20.2 to 1.21.0 in /utils/dicom_converter (#4243 ) Bumps [numpy](https://github.com/numpy/numpy) from 1.20.2 to 1.21.0. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/HOWTO_RELEASE.rst.txt) - [Commits](https://github.com/numpy/numpy/compare/v1.20.2...v1.21.0) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Nikita Manovich <nikita.manovich@intel.com>		4 years ago
..
README.md	Added DICOM conversion script (#3095 )	5 years ago
requirements.txt	Bump numpy from 1.20.2 to 1.21.0 in /utils/dicom_converter (#4243 )	4 years ago
script.py	Added DICOM conversion script (#3095 )	5 years ago

README.md

Description

The script is used to convert some kinds of DICOM data to regular images. Then you can annotate these images on CVAT and get a segmentation mask. The conversion script was tested on CT, MT and some multi-frame DICOM data. DICOM files with series (multi-frame) are saved under the same name with a number postfix: 001, 002, 003, etc.

Installation

python3 -m venv .env
. .env/bin/activate
pip install -r requirements.txt

Running

. .env/bin/activate # if not activated
python script.py input_data output_data