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History

dependabot[bot] c3608526c7 Bump pillow from 9.0.0 to 9.0.1 in /utils/dicom_converter (#4446 ) Bumps [pillow](https://github.com/python-pillow/Pillow) from 9.0.0 to 9.0.1. - [Release notes](https://github.com/python-pillow/Pillow/releases) - [Changelog](https://github.com/python-pillow/Pillow/blob/main/CHANGES.rst) - [Commits](https://github.com/python-pillow/Pillow/compare/9.0.0...9.0.1) --- updated-dependencies: - dependency-name: pillow dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>		4 years ago
..
README.md	Added DICOM conversion script (#3095 )	5 years ago
requirements.txt	Bump pillow from 9.0.0 to 9.0.1 in /utils/dicom_converter (#4446 )	4 years ago
script.py	Added DICOM conversion script (#3095 )	5 years ago

README.md

Description

The script is used to convert some kinds of DICOM data to regular images. Then you can annotate these images on CVAT and get a segmentation mask. The conversion script was tested on CT, MT and some multi-frame DICOM data. DICOM files with series (multi-frame) are saved under the same name with a number postfix: 001, 002, 003, etc.

Installation

python3 -m venv .env
. .env/bin/activate
pip install -r requirements.txt

Running

. .env/bin/activate # if not activated
python script.py input_data output_data